New Delhi, Aug 26: The government has said that interest on delayed payment of Goods and Services Tax (GST) will be charged on net tax liability with effect from September 1.

Earlier this year, the industry had raised concern over the directive of recovery of about Rs 46,000 crore of unpaid interest on delayed GST payment. The interest was charged on gross tax liability.

The GST Council, comprising centre and state finance ministers, in its 39th meeting in March had decided that interest for delay in payment of GST will be charged on net tax liability with effect from July 1, 2017, and law would be amended retrospectively.

However, the Central Board of Indirect Taxes and Customs (CBIC) on August 25, notified September 1, 2020, as the date from which interest would be charged on net tax liability.

In a statement, the CBIC later clarified that the notification relating to interest on delayed payment of GST has been issued prospectively due to certain technical limitations.

"However, it has assured that no recoveries shall be made for the past period as well by the Central and State tax administration in accordance with the decision taken in the 39th Meeting of GST Council. This will ensure full relief to the taxpayers as decided by the GST Council," the statement added.

AMRG & Associates Senior Partner Rajat Mohan said prospective availability of this benefit would mean that millions of taxpayers may be looking at the demand of interest for over 3 years from the date of GST implementation.

"Businesses are expected to approach the High Courts again on this unjustified and illegal demand of interest basis the 'principle of estoppel'," Mohan said.

The CBIC had earlier said that GST law permits interest calculation on delayed GST payment on the basis of gross tax liability. This position has been upheld in the Telangana High Court's decision dated April 18, 2019.

Net GST liability is arrived after deducting input tax credit from gross GST liability. Hence, calculating interest on gross GST liability increases the payout burden on businesses.

EY Tax Partner Abhishek Jain said, "the retrospective notification becomes all the more imperative to subside multiple notices which were issued by the revenue authorities demanding GST on gross liability.”

Businesses, other than those under the composition scheme and quarterly return filers, registered under GST have to file returns (GSTR-1) showing tax liability by 11th of the following month and pay taxes by filing GSTR-3B between 20th to 24th (due date varies according to the state in which businesses are registered).